Release notes

0.3.5 / 2026-03-02

Use lib of tagged container in local jobs by @dachengx in https://github.com/XENONnT/alea/pull/260
Remove meaningless extra print during template loading by @dachengx in https://github.com/XENONnT/alea/pull/263
Auto set source_wise_interpolation to False for binned likelihoods by @dachengx in https://github.com/XENONnT/alea/pull/264
Add argument confidence_interval_root_find indicating root finding method by @dachengx in https://github.com/XENONnT/alea/pull/265
Validate slice_axis and be compatible with Hist1d by @dachengx in https://github.com/XENONnT/alea/pull/244

Full Changelog: https://github.com/XENONnT/alea/compare/v0.3.4…v0.3.5

0.3.4 / 2025-05-13

Add sources and example notebook for 1D CES inference by @yuema137 in https://github.com/XENONnT/alea/pull/161
Parse the likelihood name to the base config by @yuema137 in https://github.com/XENONnT/alea/pull/246

Full Changelog: https://github.com/XENONnT/alea/compare/v0.3.2…v0.3.4

0.3.2 / 2025-02-03

Use importlib.resources.files and support python 3.11 by @dachengx in https://github.com/XENONnT/alea/pull/240

Full Changelog: https://github.com/XENONnT/alea/compare/v0.3.1…v0.3.2

0.3.1 / 2024-12-11

Set request_cpus as integer by @dachengx in https://github.com/XENONnT/alea/pull/220
Keep only one Directory.SHARED_SCRATCH by @dachengx in https://github.com/XENONnT/alea/pull/222
Revert “Keep only one Directory.SHARED_SCRATCH” by @dachengx in https://github.com/XENONnT/alea/pull/223
Add the workflow id to the folder in staging-davs by @dachengx in https://github.com/XENONnT/alea/pull/224
Fix livetime bug in get_expectation_values() by @hammannr in https://github.com/XENONnT/alea/pull/227
Add file hash to blueice hash by @hammannr in https://github.com/XENONnT/alea/pull/225
Make metadata error message more informative by @hammannr in https://github.com/XENONnT/alea/pull/229
Add unused needs_reinit parameters to ignored parameters by @hammannr in https://github.com/XENONnT/alea/pull/230
Tar user-installed blueice to osg nodes by @hammannr in https://github.com/XENONnT/alea/pull/231
Source-wise interpolation by @hammannr in https://github.com/XENONnT/alea/pull/228
Fix bug, only add tarball when git installed by @dachengx in https://github.com/XENONnT/alea/pull/233
Switch to master for docformatter by @dachengx in https://github.com/XENONnT/alea/pull/234
Update blueice dependence by @hammannr in https://github.com/XENONnT/alea/pull/236

Full Changelog: https://github.com/XENONnT/alea/compare/v0.3.0…v0.3.1

0.3.0 / 2024-09-21

Use pyproject.toml to install alea-inference by @dachengx in https://github.com/XENONnT/alea/pull/192
Removed deprecated _pegasus_properties by @FaroutYLq in https://github.com/XENONnT/alea/pull/196
Simplify SubmitterHTCondor by @dachengx in https://github.com/XENONnT/alea/pull/193
Debug for pypi build by @dachengx in https://github.com/XENONnT/alea/pull/197
There was a typo in docstr by @FaroutYLq in https://github.com/XENONnT/alea/pull/198
Prefer f-string than format by @dachengx in https://github.com/XENONnT/alea/pull/200
Use tree structure work directory by @dachengx in https://github.com/XENONnT/alea/pull/202
Use MB all the time in SubmitterHTCondor, no more kB by @dachengx in https://github.com/XENONnT/alea/pull/201
Decompress outputs into outputfolder by @dachengx in https://github.com/XENONnT/alea/pull/199
Support more toydata_mode by @dachengx in https://github.com/XENONnT/alea/pull/206
No need to plan or submit workflow if no job added by @dachengx in https://github.com/XENONnT/alea/pull/207
Save log for OSG jobs by @dachengx in https://github.com/XENONnT/alea/pull/208
Use shlex.quote to convert the arguments into unix format by @dachengx in https://github.com/XENONnT/alea/pull/209
Fix the usage of scripts by @dachengx in https://github.com/XENONnT/alea/pull/210
Add spectrum_axis configuration for SpectrumTemplateSource by @dachengx in https://github.com/XENONnT/alea/pull/212
Use utilix to validate X509 proxy by @dachengx in https://github.com/XENONnT/alea/pull/213
Tarball all needed templates from different folder by @dachengx in https://github.com/XENONnT/alea/pull/214
Fix the path of alea_run_toymc script by @dachengx in https://github.com/XENONnT/alea/pull/216
Tarball alea for later user installation by @dachengx in https://github.com/XENONnT/alea/pull/215
Use install.sh from utilix by @dachengx in https://github.com/XENONnT/alea/pull/217
Bump version of utilix by @dachengx in https://github.com/XENONnT/alea/pull/218

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.8…v0.3.0

0.2.8 / 2024-08-26

Fix OSG submission by @hammannr in https://github.com/XENONnT/alea/pull/189

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.7…v0.2.8

0.2.7 / 2024-08-07

Trigger PyPI workflow on “published” by @hammannr in https://github.com/XENONnT/alea/pull/185
Fix apply efficiency by @hammannr in https://github.com/XENONnT/alea/pull/187
Conditional Parameters by @hammannr in https://github.com/XENONnT/alea/pull/186
Enable choosing the fit strategy by @hammannr in https://github.com/XENONnT/alea/pull/182

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.6…v0.2.7

0.2.6 / 2024-07-31

Defunctionalize apply_efficiency, apply efficiency when efficiency_name is specified by @dachengx in https://github.com/XENONnT/alea/pull/183

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.5…v0.3.0

0.2.5 / 2024-07-30

Consistent sorting for BlueiceExtendedModel by @hammannr in https://github.com/XENONnT/alea/pull/149
Fixed data storing by @hammannr in https://github.com/XENONnT/alea/pull/152
Add lxml_html_clean to fix readthedocs building error by @zihaoxu98 in https://github.com/XENONnT/alea/pull/157
Fitting index variables by @zihaoxu98 in https://github.com/XENONnT/alea/pull/156
Print Argument combinations to be submitted by @hammannr in https://github.com/XENONnT/alea/pull/151
Minor changes to fitting index variables (PR #156) by @hammannr in https://github.com/XENONnT/alea/pull/159
Set i_batch for SubmitterLocal when submitting by @dachengx in https://github.com/XENONnT/alea/pull/164
Debug for interpolator deduction of NeymanConstructor by @dachengx in https://github.com/XENONnT/alea/pull/165
The first i batch should be 0 by @dachengx in https://github.com/XENONnT/alea/pull/166
Try prefix every file path in likelihood configuration with template folder by @dachengx in https://github.com/XENONnT/alea/pull/169
Forbid prexing every key when adapt_likelihood_config_for_blueice by @FaroutYLq in https://github.com/XENONnT/alea/pull/170
Refactored Pegasus-based OSG submitter by @FaroutYLq in https://github.com/XENONnT/alea/pull/163
Try fixing https://github.com/XENONnT/alea/issues/173 by @dachengx in https://github.com/XENONnT/alea/pull/176
Allow assigning kwargs in debug mode by @dachengx in https://github.com/XENONnT/alea/pull/174
Allow confidence_level in filename by @dachengx in https://github.com/XENONnT/alea/pull/179
Add 68% coverage as one of the defaults of confidence_levels by @dachengx in https://github.com/XENONnT/alea/pull/180
Document to increase CPUs by @FaroutYLq in https://github.com/XENONnT/alea/pull/178

New Contributors

@FaroutYLq made their first contribution in https://github.com/XENONnT/alea/pull/170

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.4…v0.2.5

0.2.4 / 2024-03-18

Point away from alea for physics models by @kdund in https://github.com/XENONnT/alea/pull/143
Make “piecewise” the default pdf interpolation by @hammannr in https://github.com/XENONnT/alea/pull/142
Enforce bins in config and template to match by @hammannr in https://github.com/XENONnT/alea/pull/144
Make model histograms accessible by @hammannr in https://github.com/XENONnT/alea/pull/140
Make local submitter verbose by @hammannr in https://github.com/XENONnT/alea/pull/146
Estimator of signal multiplier based on perturbation theory by @zihaoxu98 in https://github.com/XENONnT/alea/pull/147

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.3…v0.2.4

0.2.3 / 2024-02-22

Improve check of already made toydata and output by @dachengx in https://github.com/XENONnT/alea/pull/128
Combine several jobs into one to save computation resources by @dachengx in https://github.com/XENONnT/alea/pull/131
Check locate loaded package by @dachengx in https://github.com/XENONnT/alea/pull/134
Update hypotheses and common_hypothesis by pre_process_poi by @dachengx in https://github.com/XENONnT/alea/pull/135
Print total number of submitted jobs by @dachengx in https://github.com/XENONnT/alea/pull/137

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.2…v0.2.3

0.2.2 / 2024-01-13

Save dtype of valid_fit as bool by @dachengx in https://github.com/XENONnT/alea/pull/123
Optional setting of random seed for debugging by @dachengx in https://github.com/XENONnT/alea/pull/122
Tiny minor change on docstring by @dachengx in https://github.com/XENONnT/alea/pull/126
Change example filename extension by @kdund in https://github.com/XENONnT/alea/pull/93
Add axis_names to example templates by @hammannr in https://github.com/XENONnT/alea/pull/127
Evaluate blueice_anchors expression by @dachengx in https://github.com/XENONnT/alea/pull/124
Update pypi to use trusted publisher by @dachengx in https://github.com/XENONnT/alea/pull/130
Update versions of blueice and inference-interface by @dachengx in https://github.com/XENONnT/alea/pull/132

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.1…v0.2.2

0.2.1 / 2023-12-08

Add optional argument degree_of_freedom for asymptotic_critical_value by @dachengx in https://github.com/XENONnT/alea/pull/86
Update readthedocs configurations by @dachengx in https://github.com/XENONnT/alea/pull/88
Update tutorials by @hammannr in https://github.com/XENONnT/alea/pull/89
Add column to toyMC results with minuit convergence flag by @kdund in https://github.com/XENONnT/alea/pull/91
Debug a typo at docstring of fittable parameter by @dachengx in https://github.com/XENONnT/alea/pull/95
Improve documentation by @hammannr in https://github.com/XENONnT/alea/pull/101
Update Neyman threshold when changing runner_args by @hammannr in https://github.com/XENONnT/alea/pull/100
Allow submitter to skip the already succeeded files by @dachengx in https://github.com/XENONnT/alea/pull/94
Print time usage of Runner.run by @dachengx in https://github.com/XENONnT/alea/pull/104
Get expectation values per likelihood term by @hammannr in https://github.com/XENONnT/alea/pull/106
Prevent arguments to submission variations being changed by deepcopy-ing them. by @dachengx in https://github.com/XENONnT/alea/pull/107
Make error message more explicit that an excecutable is not found and… by @kdund in https://github.com/XENONnT/alea/pull/109
Read poi and expectation directly from output_filename to accelerate NeymanConstructor by @dachengx in https://github.com/XENONnT/alea/pull/108
Direct call of used parameters of model by @dachengx in https://github.com/XENONnT/alea/pull/112
Add function to get all sources names from all likelihoods by @dachengx in https://github.com/XENONnT/alea/pull/111
Make sure values of parameters that need re-initialization are not changed by @hammannr in https://github.com/XENONnT/alea/pull/110
Allow all computation names by @kdund in https://github.com/XENONnT/alea/pull/116
Debug for the missing argument in _read_poi by @dachengx in https://github.com/XENONnT/alea/pull/118
Remove unnecessary warning given new ptype constraints by @dachengx in https://github.com/XENONnT/alea/pull/119

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.0…v0.2.1

0.2.0 / 2023-09-01

Proposal to use pre-commit for continuous integration by @dachengx in https://github.com/XENONnT/alea/pull/78
Example notebooks by @hammannr in https://github.com/XENONnT/alea/pull/75
Simplify TemplateSource, CombinedSource and SpectrumTemplateSource by @dachengx in https://github.com/XENONnT/alea/pull/69
[pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/XENONnT/alea/pull/80
[pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/XENONnT/alea/pull/82
Add Submitter and NeymanConstructor by @dachengx in https://github.com/XENONnT/alea/pull/79

New Contributors

@pre-commit-ci made their first contribution in https://github.com/XENONnT/alea/pull/80

Full Changelog: https://github.com/XENONnT/alea/compare/v0.1.0…v0.2.0

0.1.0 / 2023-08-11

Unify and clean code style and docstring by @dachengx in https://github.com/XENONnT/alea/pull/68
First runner manipulating statistical model by @dachengx in https://github.com/XENONnT/alea/pull/50
Set best_fit_args to confidence_interval_args if None by @kdund in https://github.com/XENONnT/alea/pull/76
Livetime scaling by @kdund in https://github.com/XENONnT/alea/pull/73

Full Changelog: https://github.com/XENONnT/alea/compare/v0.0.0…v0.1.0

0.0.0 / 2023-07-28

readme update with pointer to previous work in lieu of commit history by @kdund in https://github.com/XENONnT/alea/pull/8
Adds a statistical model base class (under construction by @kdund in https://github.com/XENONnT/alea/pull/7
change folder/module name by @kdund in https://github.com/XENONnT/alea/pull/9
Move submission_script.py also from binference to here by @dachengx in https://github.com/XENONnT/alea/pull/10
Add simple gaussian model by @hammannr in https://github.com/XENONnT/alea/pull/12
Parameter class by @hammannr in https://github.com/XENONnT/alea/pull/19
Confidence intervals by @kdund in https://github.com/XENONnT/alea/pull/27
Update README.md by @kdund in https://github.com/XENONnT/alea/pull/29
Init code style checking, pytest, and coverage by @dachengx in https://github.com/XENONnT/alea/pull/31
Add templates for wimp example by @hoetzsch in https://github.com/XENONnT/alea/pull/30
Removes all hash for parameters not used for each source, and for all… by @kdund in https://github.com/XENONnT/alea/pull/37
First implementation of an nT-like likelihood by @hammannr in https://github.com/XENONnT/alea/pull/32
Check if some parameter is not set as guess when fitting by @kdund in https://github.com/XENONnT/alea/pull/44
Fix likelihood_names check in statistical_model.store_data to handle unnamed likelihoods by @kdund in https://github.com/XENONnT/alea/pull/45
Create pull_request_template.md by @dachengx in https://github.com/XENONnT/alea/pull/46
Codes style cleaning by @dachengx in https://github.com/XENONnT/alea/pull/49
First runner manipulating statistical model by @dachengx in https://github.com/XENONnT/alea/pull/47
Run test on main not master by @dachengx in https://github.com/XENONnT/alea/pull/55
Simplify file structure by @dachengx in https://github.com/XENONnT/alea/pull/51
Move blueice_extended_model to models by @dachengx in https://github.com/XENONnT/alea/pull/56
Change data format to only use structured arrays by @kdund in https://github.com/XENONnT/alea/pull/42
Another fitting test by @kdund in https://github.com/XENONnT/alea/pull/59
Add first tests module and file indexing system by @dachengx in https://github.com/XENONnT/alea/pull/54
Shape parameters by @hammannr in https://github.com/XENONnT/alea/pull/58
Recover examples folder, update file indexing, add notebooks folder, remove legacies by @dachengx in https://github.com/XENONnT/alea/pull/61
Remove pdf_cache folder before pytest by @dachengx in https://github.com/XENONnT/alea/pull/65
Make 0.0.0, initialize documentation structure based on readthedocs, add badges to README by @dachengx in https://github.com/XENONnT/alea/pull/66

New Contributors

@kdund made their first contribution in https://github.com/XENONnT/alea/pull/8
@dachengx made their first contribution in https://github.com/XENONnT/alea/pull/10
@hammannr made their first contribution in https://github.com/XENONnT/alea/pull/12
@hoetzsch made their first contribution in https://github.com/XENONnT/alea/pull/30